miRBase entry: eca-mir-507b

Stem-loop eca-mir-507b


Accession
MI0028331
Description
Equus caballus eca-mir-507b precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

33 reads, 5 reads per million, 1 experiments
gcagggucacuacauuuaaccauacugugugcagugcuccacuccaaagagugccauucagguguaggaaaguaugAUUGGCACUUUUUUGAGUGUGguaauucacaacauauacgaccacauguguuggcccuggg
.((((((((.(((((..........((((((...((((.(((((.(((((((((((.(((..............))).))))))))))).))))).))))...))).)))...........))))).))))))))..

Structure
-g        c     -uuaaccauac   -   cag    c     c           u   ggugua 
  caggguca uacau           ugu gug   ugcu cacuc aaagagugcca uca      g
  |||||||| |||||           ||| |||   |||| ||||| ||||||||||| |||       
  gucccggu gugua           aca cac   augG GUGAG UUUUUCACGGU Agu      g
gg        u     caccagcauau   a   uua    U     U           U   augaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 116771992-116772128 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-507b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-507b

Accession MIMAT0034699
Description Equus caballus eca-miR-507b mature miRNA
Sequence 77 - AUUGGCACUUUUUUGAGUGUG - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545