miRBase entry: eca-mir-8908d-1

Stem-loop eca-mir-8908d-1


Accession
MI0028330
Description
Equus caballus eca-mir-8908d-1 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

6582 reads, 996 reads per million, 1 experiments
acuuugagccauucugugugcagugcccuacccgguaagguacugaucacuuacuuagacuacauguGAUCAGUGCCUGUCUGGGUGGAguaaugcucuacaagagcaacguuugggag
..(((((((..(((((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))).))))....)))))))..

Structure
ac       --ca    -   -u   g   c        ua             uuacuu 
  uuugagc    uucu gug  gca ugc cuacccgg  agguacugaucac      a
  |||||||    |||| |||  ||| ||| ||||||||  |||||||||||||      g
  ggguuug    gaga cau  cgu aug GGUGGGUC  UCCGUGACUAGug      a
ga       caac    a   cu   a   A        UG             uacauc 


Annotation confidence Not enough data
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Genome context
chrX: 115867856-115867974 [-]
Clustered miRNAs
21 other miRNAs are < 10 kb from eca-mir-8908d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908d

Accession MIMAT0034698
Description Equus caballus eca-miR-8908d mature miRNA
Sequence 68 - GAUCAGUGCCUGUCUGGGUGGA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545