miRBase entry: eca-mir-8908b-1

Stem-loop eca-mir-8908b-1


Accession
MI0028329
Description
Equus caballus eca-mir-8908b-1 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

157 reads, 24 reads per million, 1 experiments
ccaugcugugugcagugcccuacccgguagguacugaucacuuagccuacgugUAAUUAGUACCUGUCUGGGUAGAguaaggccaacaaga
......(((..((..(((.((((((((((((((((((((((.........)))..))))))))))).)))))))).)))..))..)))...

Structure
ccaugc   gu  ag   c        -           --   uua 
      ugu  gc  ugc cuacccgg uagguacugau  cac   g
      |||  ||  ||| |||||||| |||||||||||  |||   c
      aca  cg  aug GAUGGGUC GUCCAUGAUUA  gug   c
---aga   ac  ga   A        U           AU   cau 


Annotation confidence Not enough data
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Genome context
chrX: 115877541-115877631 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from eca-mir-8908b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908b

Accession MIMAT0034697
Description Equus caballus eca-miR-8908b mature miRNA
Sequence 54 - UAAUUAGUACCUGUCUGGGUAGA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545