miRBase entry: eca-mir-8908k-1

Stem-loop eca-mir-8908k-1


Accession
MI0028326
Description
Equus caballus eca-mir-8908k-1 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

1125 reads, 170 reads per million, 1 experiments
uuccuccaccuugagccaugcagugugcagugcccUACCCAGAAUGGUGCCGAAUACUUAgucuacauguauucggcaccuucuggguagcguaaugcucaacacgaacgcuguucuuguuggccuuaugaccgg
..............((..((((...))))..)).((((((((((.((((((((((((...........))))))))))))))))))))))(((((.((.(((((.((((...)))).))))))).))))).....

Structure
-----------uuccuccaccuugagccaugcagugugcagugcc          U            UUAg 
                                             cUACCCAGAA GGUGCCGAAUAC    u
                                             |||||||||| ||||||||||||    c
                                             gaugggucuu ccacggcuuaug    u
ggccaguauuccgguuguucuugucgcaagcacaacucguaaugc          -            uaca 


Annotation confidence Not enough data
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Genome context
chrX: 115865120-115865254 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from eca-mir-8908k-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908k

Accession MIMAT0034694
Description Equus caballus eca-miR-8908k mature miRNA
Sequence 36 - UACCCAGAAUGGUGCCGAAUACUUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545