miRBase entry: eca-mir-7177b

Stem-loop eca-mir-7177b


Accession
MI0028323
Description
Equus caballus eca-mir-7177b precursor miRNA

Literature search
2 open access papers mention eca-mir-7177b
(2 sentences)

Sequence

24 reads, 4 reads per million, 1 experiments
ugcucauccauacgaagugauuaguuucuccagggcacuaggagaccacuugguaaauuacuuuaaccaagcacucuAAAUGGUCCCCUAGUGCUCUGGgaaaguuaaucucauucaccuuccauggaagagcagauua
(((((.(((((..((((.((((((((((.(((((((((((((.(((((((((((.((.....)).)))))).........))))).))))))))))))))))).))))))........)))).))))).))))).....

Structure
-----     a     ac    -------u      -    u             a     ---------      a  u 
     ugcuc uccau  gaag        gauuag uuuc ccagggcacuagg gacca         cuuggu aa u
     ||||| |||||  ||||        |||||| |||| ||||||||||||| |||||         |||||| || a
     acgag aggua  cuuc        cuaauu aaag GGUCUCGUGAUCC CUGGU         gaacca uu c
auuag     a     -c    cacuuacu      g    -             C     AAAucucac      a  u 


Annotation confidence Not enough data
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Genome context
chr13: 15364471-15364609 [+]

Database links

Mature eca-miR-7177b

Accession MIMAT0034691
Description Equus caballus eca-miR-7177b mature miRNA
Sequence 78 - AAAUGGUCCCCUAGUGCUCUGG - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545