miRBase entry: eca-mir-483

Stem-loop eca-mir-483


Accession
MI0028301
Description
Equus caballus eca-mir-483 precursor miRNA
Gene family
MIPF0000180; mir-483

Literature search
2 open access papers mention eca-mir-483
(7 sentences)

Sequence

321 reads, 49 reads per million, 1 experiments
gcugagccuuggagccuguggugggggagcgggggaggacgggaggggaggagggcgugguuuuaugcagcuccUCACUCCUCUCCUCCCGUCUUCUUcuucuuccucccauuccugccugucucggcggcuc
((((((.(..((.....((((.(((((((.(((((((((((((((((((((((((.((.((.....)).)).))...))))))))))))))))))))))).))))))))))).....)).).)))))).....

Structure
-----      c uu  agccu    u       c                       ---  c  g  u 
     gcugag c  gg     gugg gggggag gggggaggacgggaggggaggag   gg gu gu u
     |||||| |  ||     |||| ||||||| |||||||||||||||||||||||   || || || u
     cggcuc g  cc     uacc cuccuuc ucUUCUUCUGCCCUCCUCUCCUC   cc cg cg a
cucgg      u -u  guccu    -       u                       ACU  u  a  u 


Annotation confidence Not enough data
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Genome context
chr12: 30634767-30634899 [-]

Database links

Mature eca-miR-483

Accession MIMAT0034670
Description Equus caballus eca-miR-483 mature miRNA
Sequence 75 - UCACUCCUCUCCUCCCGUCUUCUU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545