miRBase entry: eca-mir-9102

Stem-loop eca-mir-9102


Accession
MI0028279
Description
Equus caballus eca-mir-9102 precursor miRNA


Sequence

3 reads, 0 reads per million, 1 experiments
cacuucccguccccucaggcgaugaagcaggccucagcggGCGGGUUGCAUCUGAGAGGGGACCuggggccaaucugggggugcugucucuuggaccuaaaucuagauguggccagccuugcucuugcacccuggggaaccgg
......(((...(((((((.(.....(((((....(((((((.((((((((((((...(((.((.(((((..(((....)))...)))))..)).)))...)).)))))))))).))).))))))))).))))))))...)))

Structure
cacuuc   ucc       c augaa     ccuc    -   G          -  GAG   A  -u     -ca   u 
      ccg   ccucagg g     gcagg    agcg gGC GGUUGCAUCU GA   GGG CC  ggggc   auc g
      |||   ||||||| |     |||||    |||| ||| |||||||||| ||   ||| ||  |||||   |||  
      ggc   ggggucc c     cguuc    ucgu ccg ccgguguaga cu   ucc gg  cucug   ugg g
------   caa       - ----a     ----    u   a          u  aaa   a  uu     ucg   g 


Annotation confidence Not enough data
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Genome context
chr11: 988544-988686 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9102
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9102

Accession MIMAT0034649
Description Equus caballus eca-miR-9102 mature miRNA
Sequence 41 - GCGGGUUGCAUCUGAGAGGGGACC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545