Stem-loop eca-mir-9082

Accession

MI0028255

Description

Equus caballus eca-mir-9082 precursor miRNA

Sequence

4 reads, 1 reads per million, 1 experiments

uugcaucccccgccguuccagggacccccagcguuggccuUUCUUCCUCUCACAACCCUCAGACAccucauaggagccuaaaguggucaccguggguccugugagcagggagaggggagggguugugggaugcagugggcugcug
..(((...((((((((((((..((((((.........(((((((((((((((((((((.(.(..(((...(((....)))....)))..).).))))..)))))).))))))))))).)))))).)))))))..))))).)))..

Structure

uu   ucc     --       gg      cagcguugg           -      --    U A AC   -uca   g 
  gca   cccgc  cguucca  gacccc         ccuUUCUUCCU CUCACA  ACCC C G  Acc    uag a
  |||   |||||  |||||||  ||||||         ||||||||||| ||||||  |||| | |  |||    |||  
  cgu   gggug  guagggu  uugggg         ggggagaggga gagugu  uggg g c  ugg    auc g
gu   --c     ac       -g      --------a           c      cc    u c ac   ugaa   c 

Annotation confidence Not enough data

Genome context

chr4: 83689957-83690101 [-]

Mature eca-miR-9082

• Accession: MIMAT0034627
• Description: Equus caballus eca-miR-9082 mature miRNA
• Sequence: 41 - UUCUUCCUCUCACAACCCUCAGACA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545