Stem-loop eca-mir-9079

Accession

MI0028252

Description

Equus caballus eca-mir-9079 precursor miRNA

Sequence

227 reads, 34 reads per million, 1 experiments

agcgaauauggcuguuuucaugggugucucuaaacgauaccacuaggcuguugagggcugcaugguauagaccaagucaaUGUUGCAGUUCGUCAUCAACCUGUGguaucagagauucugguuccccgugugagugugguagucg
..(((.(((.((..(((.((((((.((((((....((((((((.(((.((.(((((((((((((((....)))).........)))))))).))).)).)))))))))))))))))........)))))).))).)).))).)))

Structure

ag   a   g  ug   u      -------u      aaac        u   c  u   -        ---------    a 
  cga uau gc  uuu cauggg        gucucu    gauaccac agg ug uga gggcugca         uggu u
  ||| ||| ||  ||| ||||||        ||||||    |||||||| ||| || ||| ||||||||         ||||  
  gcu aug ug  gag gugccc        uagaga    cuaugGUG UCC AC ACU CUUGACGU         acca a
--   g   g  -u   u      cuuggucu      ----        -   A  U   G        UGUaacuga    g 

Annotation confidence Not enough data

Genome context

chr3: 22431359-22431503 [+]

Mature eca-miR-9079

• Accession: MIMAT0034624
• Description: Equus caballus eca-miR-9079 mature miRNA
• Sequence: 81 - UGUUGCAGUUCGUCAUCAACCUGUG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545