miRBase entry: eca-mir-9065

Stem-loop eca-mir-9065


Accession
MI0028238
Description
Equus caballus eca-mir-9065 precursor miRNA


Sequence

37 reads, 6 reads per million, 1 experiments
aaugcucccccucuaccauauuuccuugaacucggggucgUGGGACUGAGCCUGUAGGGGCCAGCacacccuccugcuggggcuucuccagagugugucauccucccuguccccagaucagguaucucuggcacagggcuagcac
..((((..((((...(((......(((((.((.((((.((.((((.((((((((.(((((((((((........))))..))))))).))).))...)))...)))))).)))))).)))))......)))...))))..)))).

Structure
aa    cc    cua   uauuuc     a  c    u  U    --C   ---  -   U       --    cac 
  ugcu  cccu   cca      cuuga cu gggg cg GGGA   UGA   GC CUG AGGGGCC  AGCa   c
  ||||  ||||   |||      ||||| || |||| || ||||   |||   || ||| |||||||  ||||    
  acga  ggga   ggu      ggacu ga cccc gu cccu   acu   ug gac ucuucgg  ucgu   c
-c    uc    cac   cucuau     a  -    u  -    ccu   gug  a   c       gg    ccu 


Annotation confidence Not enough data
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Genome context
chr2: 28386795-28386939 [+]

Database links

Mature eca-miR-9065

Accession MIMAT0034610
Description Equus caballus eca-miR-9065 mature miRNA
Sequence 41 - UGGGACUGAGCCUGUAGGGGCCAGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545