miRBase entry: eca-mir-9057

Stem-loop eca-mir-9057


Accession
MI0028228
Description
Equus caballus eca-mir-9057 precursor miRNA


Sequence

accacccuggaguacgcaggcauccccagucucgggccugCAGGAGUAGCUUUGGCCUAGCCggugaccauccuuggcccaggcuggcccuacuuuguggccaggaucacaggcagggagagccugacauuccaccccc
.......((((((...(((((.(((((.(((((.((((.((((.(((((....((((.((((((.(.(((....)))))).)))))))))))))))))))))..)).....))).))).)))))))..)))))).....

Structure
accaccc      acg     a  -   a   -----  -g    u    G     CUUU    U    -  u a   u 
       uggagu   caggc uc ccc guc     uc  ggcc gCAG AGUAG    GGCC AGCC gg g cca c
       ||||||   ||||| || ||| |||     ||  |||| |||| |||||    |||| |||| || | |||  
       accuua   guccg ag ggg cgg     ag  ccgg uguu ucauc    ccgg ucgg cc c ggu c
--ccccc      -ca     -  a   a   acacu  ga    -    -     ----    -    a  - -   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 28265739-28265877 [-]

Database links

Mature eca-miR-9057

Accession MIMAT0034601
Description Equus caballus eca-miR-9057 mature miRNA
Sequence 41 - CAGGAGUAGCUUUGGCCUAGCC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545