miRBase entry: eca-mir-9046

Stem-loop eca-mir-9046


Accession
MI0028214
Description
Equus caballus eca-mir-9046 precursor miRNA


Sequence

4 reads, 0 reads per million, 1 experiments
accacggccgugaaaagugcccccuUGCUGUUGACGAACUGGCCGGGCAGcgccguccacuggcccguggccagguugaggcagucgauggcacaguguaggaagucgucggaag
.((((((((.((....(((((...((((((((..(((.((((((((((((.(.....).)).))))..)))))).))).))))).))).)))))....)).)..))))).))...

Structure
--a  -     -- g  aaaa     ccc   -     GA   A      --    -  c c 
   cc acggc  c ug    gugcc   uUG CUGUU  CGA CUGGCC  GGGC AG g c
   || |||||  | ||    |||||   ||| |||||  ||| ||||||  |||| || | g
   gg ugcug  g au    cacgg   agc gacgg  guu gaccgg  cccg uc c u
gaa  c     aa g  guga     --u   u     -a   g      ug    g  a c 


Annotation confidence Not enough data
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Genome context
chr1: 127270581-127270695 [+]

Database links

Mature eca-miR-9046

Accession MIMAT0034590
Description Equus caballus eca-miR-9046 mature miRNA
Sequence 26 - UGCUGUUGACGAACUGGCCGGGCAG - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545