miRBase entry: eca-mir-9042

Stem-loop eca-mir-9042


Accession
MI0028207
Description
Equus caballus eca-mir-9042 precursor miRNA


Sequence

34 reads, 5 reads per million, 1 experiments
gguaaacggcucagguggaggugcgugggccauuguccacgucugagcuccaucaccagaggacgagguaggacgggaccUGUUUGUGCUCGUGGGUCCAGAGUGcaaugugucugugcaaccagcucccucacugaggucuggg
........((((.(((((((.(((((((((....))))))))...).))))))).((((((.(((((..(((......))).))))).))).))).....)))).................((((...((((...)))).)))).

Structure
---------------------------------gguaaacg    agguggaggugcgugggccauuguccacgucugagcuccauca   -   g     gu   ac 
                                         gcuc                                           cca gag acgag  agg  g
                                         ||||                                           ||| ||| |||||  |||   
                                         UGAG                                           GGU CUC UGUUU  Ucc  g
gggucuggagucacucccucgaccaacgugucuguguaacG    --------------------------------------ACCUG   G   G     -G   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr25: 37092185-37092329 [-]

Database links

Mature eca-miR-9042

Accession MIMAT0034584
Description Equus caballus eca-miR-9042 mature miRNA
Sequence 81 - UGUUUGUGCUCGUGGGUCCAGAGUG - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545