miRBase entry: eca-mir-9033-2

Stem-loop eca-mir-9033-2


Accession
MI0028205
Description
Equus caballus eca-mir-9033-2 precursor miRNA
Gene family
MIPF0002087; mir-9033


Sequence

1 reads, 0 reads per million, 1 experiments
auggcccagcuggggucgcaaccuaggucaaucugaccccaaaggcugugcuugcacaggagcccaaggaggugccUCUGAGCCCAGCCUUGGAGGUgaguccacggaggauggguggcgacagggagggacgcugc
....(((..((...(((((.(((((..((...((.(((((((.(((((.(((((...(((.(((......))).))).))))).))))))))).))).))......))...))))).))))).))..))).......

Structure
---augg   ag  ggg     a     -gg  ---aau  g   -    a     u     cac   a   ca 
       ccc  cu   gucgc accua   uc      cu acc ccaa ggcug gcuug   agg gcc  a
       |||  ||   ||||| |||||   ||      || ||| |||| ||||| |||||   ||| |||   
       ggg  gg   cagcg ugggu   ag      ga UGG GGUU CCGAC CGAGU   Ucc ugg  g
cgucgca   ag  --a     g     agg  gcaccu  g   A    -     C     --C   g   ag 


Annotation confidence Not enough data
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Genome context
chr25: 35426557-35426693 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9033-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9033

Accession MIMAT0034575
Description Equus caballus eca-miR-9033 mature miRNA
Sequence 77 - UCUGAGCCCAGCCUUGGAGGU - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545