miRBase entry: eca-mir-9038

Stem-loop eca-mir-9038


Accession
MI0028202
Description
Equus caballus eca-mir-9038 precursor miRNA


Sequence

248 reads, 10 reads per million, 1 experiments
accccaccacagcccaucccagcccugcucagcacccccugagccgagggcccaggaaggagguguggggagccaccugcUCACACAUCAGCCUGGUGCCUCAGUccugcaaggccagcugcauguggggcugggccggcugugu
.......(((((((...(((((((((((.((((....(((..((.(((((((((((..((..(((((((.((....)).))))))).))..))))).))))...))..)).)))...))))...)))))))))))..))))))).

Structure
accccac       cau           --u    accc   ga  -c  ---    -     aa  ag       g  c 
       cacagcc   cccagcccugc   cagc    ccu  gc  ga   gggc ccagg  gg  guguggg ag c
       |||||||   |||||||||||   ||||    |||  ||  ||   |||| |||||  ||  ||||||| ||  
       gugucgg   gggucggggug   gucg    gga  cg  cU   UCCG GGUCC  CU  CACACUc uc a
------u       -cc           uac    -acc   -a  uc  GAC    U     GA  -A       g  c 


Annotation confidence Not enough data
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Genome context
chr25: 35423203-35423347 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9038
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9038

Accession MIMAT0034580
Description Equus caballus eca-miR-9038 mature miRNA
Sequence 81 - UCACACAUCAGCCUGGUGCCUCAGU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545