miRBase entry: eca-mir-9020

Stem-loop eca-mir-9020


Accession
MI0028183
Description
Equus caballus eca-mir-9020 precursor miRNA


Sequence

7 reads, 1 reads per million, 1 experiments
caagguguucaaaaggugugcuuccugcagucgagcuggaUAGGAAGAGAGUUGGGCAGGGAGUCacagccuguguggaagcuuccggcccaugacucugaccacagcgcuggggccauggcaggaaagagacagcuuugcccca
...((.((...((((.(((.((((((((.(((..((((....(..((((...(((((.((((((((((.....))))...)))))).)))))...))))..)..)))).....)))....))))).)))..))).)))))).)).

Structure
caa  u  uca    g   -g   -     ---a   ---ga    gaUA GA    AGU     A      ---    g 
   gg gu   aaag ugu  cuu ccugc    guc     gcug    G  AGAG   UGGGC GGGAGU   Caca c
   || ||   |||| |||  ||| |||||    |||     ||||    |  ||||   ||||| ||||||   |||| c
   cc cg   uuuc aca  gaa ggacg    cgg     cgac    c  ucuc   acccg ccuucg   gugu u
--a  c  ---    g   ga   a     guac   ggucg    --ac ag    agu     g      aag    g 


Annotation confidence Not enough data
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Genome context
chr28: 42568408-42568552 [+]

Database links

Mature eca-miR-9020

Accession MIMAT0034561
Description Equus caballus eca-miR-9020 mature miRNA
Sequence 41 - UAGGAAGAGAGUUGGGCAGGGAGUC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545