Stem-loop eca-mir-3200

Accession

MI0028172

Description

Equus caballus eca-mir-3200 precursor miRNA

Gene family

MIPF0001441; mir-3200

Sequence

85 reads, 13 reads per million, 1 experiments

caccgaccgagagagacagaaaaggaggcggucgagggaaucugagaaggcgcacaagguuuguguccaauacgcuccaCACCUUGCGCUACUCAGGUCUGCUcgugcccucccaugguaucagcucuccugcgaugugggga
..((.((((.(((((........(((((.(..((((.(.(((((((..((((((..((((..((((.....)))).....)))))))))).))))))).).))))..))))))...........)))))...))..)).))..

Structure

ca  g  --  --a     ---acagaaaa     c gu    g a       aa      ca    ---uu    c 
  cc ac  cg   gagag           ggagg g  cgag g aucugag  ggcgca  aggu     gugu c
  || ||  ||   |||||           ||||| |  |||| | |||||||  ||||||  ||||     |||| a
  gg ug  gc   cucuc           ccucc c  gcUC U UGGACUC  UCGCGU  UCCA     cgca a
ag  g  ua  guc     gacuaugguac     - gu    G C       -A      --    Caccu    u 

Annotation confidence Not enough data

Genome context

chr8: 6217988-6218130 [-]

Mature eca-miR-3200

• Accession: MIMAT0034551
• Description: Equus caballus eca-miR-3200 mature miRNA
• Sequence: 80 - CACCUUGCGCUACUCAGGUCUGCU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545