Stem-loop eca-mir-9007

Accession

MI0028168

Description

Equus caballus eca-mir-9007 precursor miRNA

Sequence

caggggguccucccggcucugaggggugggggaugguucaUGCUGCCUUUCUGGAAGUcggucuguaacgugcuuccagagccuuagucaggcacaaccuuugaucccuuccaaacgucagcggugggacc
.....((((((.(((...((((.(..(((((((((((...((.(((((((((((((((((........)).))))))))))........))))))))))....)))))..)))..).))))))).))))))

Structure

caggg      c   gcu    g gg   --     ----   uca  C     --------          -  guc 
     gguccu ccg   cuga g  ugg  gggau    ggu   UG UGCCU        UUCUGGAAGU cg   u
     |||||| |||   |||| |  |||  |||||    |||   || |||||        |||||||||| ||    
     ccaggg ggc   gacu c  acc  cccua    cca   ac acgga        gagaccuucg gc   g
-----      u   ---    g aa   uu     guuu   ---  -     cugauucc          u  aau 

Annotation confidence Not enough data

Genome context

chr8: 4099937-4100067 [+]

Mature eca-miR-9007

• Accession: MIMAT0034547
• Description: Equus caballus eca-miR-9007 mature miRNA
• Sequence: 41 - UGCUGCCUUUCUGGAAGU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545