Stem-loop eca-mir-9002-1

Accession

MI0028162

Description

Equus caballus eca-mir-9002-1 precursor miRNA

Gene family

MIPF0001969; mir-9002

Sequence

9 reads, 1 reads per million, 1 experiments

agccccagcucagccugcugagccauggagaggagucucguuuccaucaguucuucucgggccucUGAGCUUGGAGUGAGAUGAGAUCUGcccuggauccaguagccugggcccu
.......((((((.((((((.((((.((.(.(((.(((((((....(((.(((..(((((....)))))...))).))))))))))))).)))))).).)))))).))))))...

Structure

agcccca      c      a -   u  a a   g       ucca   g   -uu     g 
       gcucag cugcug g cca gg g gga ucucguu    uca uuc   cucgg c
       |||||| |||||| | ||| || | ||| |||||||    ||| |||   |||||  
       cggguc gaugac u ggu cc c UCU AGAGUAG    AGU AGG   GAGUc c
----ucc      c      c a   -  - G   -       ----   G   UUC     u 

Annotation confidence Not enough data

Genome context

chr8: 28633680-28633794 [+]

Mature eca-miR-9002

• Accession: MIMAT0034542
• Description: Equus caballus eca-miR-9002 mature miRNA
• Sequence: 66 - UGAGCUUGGAGUGAGAUGAGAUCUG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545