Stem-loop eca-mir-1271b

Accession

MI0028149

Description

Equus caballus eca-mir-1271b precursor miRNA

Gene family

MIPF0000483; mir-1271

Sequence

6 reads, 1 reads per million, 1 experiments

uacccaugaacaucuuaggacagcgUUUGGCACAUGACAAGCACUCAaaauagcacugaucaguuauugagcgcuuaaugugugccaggcccuguuuuaagggcuuucg
.......(((..(((((((((((.(((((((((((...((((.((((..(((((........))))))))).))))...))))))))))).)))))))))))...))).

Structure

uacccau   -ca           c           GAC    A    aa     acu 
       gaa   ucuuaggacag gUUUGGCACAU   AAGC CUCA  auagc   g
       |||   ||||||||||| |||||||||||   |||| ||||  |||||    
       cuu   ggaauuuuguc cggaccgugug   uucg gagu  uauug   a
------g   ucg           c           uaa    c    --     acu 

Annotation confidence Not enough data

Genome context

chr7: 44819619-44819727 [+]

Mature eca-miR-1271b

• Accession: MIMAT0034530
• Description: Equus caballus eca-miR-1271b mature miRNA
• Sequence: 26 - UUUGGCACAUGACAAGCACUCA - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545