miRBase entry: eca-mir-8979

Stem-loop eca-mir-8979


Accession
MI0028135
Description
Equus caballus eca-mir-8979 precursor miRNA


Sequence

60 reads, 9 reads per million, 1 experiments
aucccaggagugucccgaccgucaccacuccuggggugccUGCUGGCUGUGGAACAGAGUCCUGUgcucugggccuuggcugcuguggacauugggccagggucaggaucaggguggggguggggcaguauugauaccucugaga
.((.((((.(((((...((.(((.((((((((......((((((((((.(((..(((.((((...((....(((....)))))...)))).)))..))).))))))...))))..))))))))))).))...))))).)))).))

Structure
a  c    a     ccg  c   a        ggggug    ---      G   AA   A    UGU  ucug   c 
 uc cagg guguc   ac guc ccacuccu      ccUG   CUGGCU UGG  CAG GUCC   gc    ggc u
 || |||| |||||   || ||| ||||||||      ||||   |||||| |||  ||| ||||   ||    |||  
 ag gucu cauag   ug cgg gguggggg      ggac   gacugg acc  guu cagg   cg    ucg u
-  a    c     uua  a   -        ----ug    uag      g   gg   a    ugu  ----   g 


Annotation confidence Not enough data
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Genome context
chr6: 24386894-24387038 [+]

Database links

Mature eca-miR-8979

Accession MIMAT0034516
Description Equus caballus eca-miR-8979 mature miRNA
Sequence 41 - UGCUGGCUGUGGAACAGAGUCCUGU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545