miRBase entry: eca-mir-8956

Stem-loop eca-mir-8956


Accession
MI0028107
Description
Equus caballus eca-mir-8956 precursor miRNA


Sequence

4 reads, 1 reads per million, 1 experiments
ggcccccuaccagugguaaccuguucacuaacgcuuuuucUUGACUUGGAUCUUUGCCUCGGAGGaucuuugccucugcuuuuggggaggauuuaagcuaaggcagagaagucuggagggcuuaucuuuggcaggaaaauguaaa
.....(((.((((.(((((.((.((((......((((.(((((.(((((((((((.((.((((((.......)))))).....)).))))))))))).))))).)))).....)))).)).))))).)))).)))..........

Structure
-----ggccc   a    u     c  g    cuaacg    u     A           G  ----U      au 
          ccu ccag gguaa cu uuca      cuuu ucUUG CUUGGAUCUUU CC     CGGAGG  c
          ||| |||| ||||| || ||||      |||| ||||| ||||||||||| ||     ||||||  u
          gga gguu cuauu gg aggu      gaga ggaau gaauuuaggag gg     gucucc  u
aaauguaaaa   c    u     c  g    -cugaa    c     c           g  uuuuc      gu 


Annotation confidence Not enough data
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Genome context
chr24: 11922848-11922992 [+]

Database links

Mature eca-miR-8956

Accession MIMAT0034488
Description Equus caballus eca-miR-8956 mature miRNA
Sequence 41 - UUGACUUGGAUCUUUGCCUCGGAGG - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545