miRBase entry: eca-mir-8947

Stem-loop eca-mir-8947


Accession
MI0028094
Description
Equus caballus eca-mir-8947 precursor miRNA


Sequence

35 reads, 3 reads per million, 1 experiments
gcugucaaagagcauacugccuauguuuucuuguaggcguugcaugguuucgggugugacauugaagucaaaccCGAGGAGGCUGCAGUUCCCCGAGAgcgagcguagcgcggaaccugcgucccugucagcg
((((.((..(((((..(((((((((((((((((..((..(((((...((((((((.((((......)))).))))))))....)))))..)).)))))..)))))))).))))....))).))..)).)))).

Structure
-    u  aa  -   --ua    -        --     ua  cg     -ugg        g    au 
 gcug ca  ga gca    cugc cuauguuu  ucuug  gg  uugca    uuucgggu ugac  u
 |||| ||  || |||    |||| ||||||||  |||||  ||  |||||    |||||||| ||||   
 cgac gu  cu cgu    ggcg gaugcgag  AGAGC  CC  GACGU    GGAGCcca acug  g
g    u  cc  g   ccaa    c        cg     -C  UU     CGGA        a    aa 


Annotation confidence Not enough data
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Genome context
chr23: 196356-196488 [-]

Database links

Mature eca-miR-8947

Accession MIMAT0034476
Description Equus caballus eca-miR-8947 mature miRNA
Sequence 75 - CGAGGAGGCUGCAGUUCCCCGAGA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545