miRBase entry: eca-mir-8932-1

Stem-loop eca-mir-8932-1


Accession
MI0028069
Description
Equus caballus eca-mir-8932-1 precursor miRNA
Gene family
MIPF0002071; mir-8932


Sequence

2 reads, 0 reads per million, 1 experiments
gacgcugcugcugcucucuggggagcuggccgagguggcuugcccgcgugccgggggcucuggcgccaguggcacgUGUGCUGGGAGCGCCUGAGCCgugguggccgcacgggcugcccagaggcgcccggggggcu
...(((.((...((((((((((.(((...(((..((((((...(((((.((((((.(((((.(((((........).))))..))))).)))).))))))).)))))).)))))).)))))))).))...)).))).

Structure
gac   g  gcu  -        g   ugg   ag      ugc     u  -    g     -g    - agu 
   gcu cu   gc ucucuggg agc   ccg  guggcu   ccgcg gc cggg gcucu  gcgc c   g
   ||| ||   || |||||||| |||   |||  ||||||   ||||| || |||| |||||  |||| |    
   cgg gg   cg ggagaccc ucg   ggc  cgccgg   ggugC CG GUCC CGAGG  CGUG g   g
--u   g  gcc  c        g   ---   -a      --u     -  A    G     GU    U cac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_001876707.1: 7416-7552 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-8932-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8932

Accession MIMAT0034460
Description Equus caballus eca-miR-8932 mature miRNA
Sequence 77 - UGUGCUGGGAGCGCCUGAGCC - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545