miRBase entry: eca-mir-8909

Stem-loop eca-mir-8909


Accession
MI0028044
Description
Equus caballus eca-mir-8909 precursor miRNA


Sequence

2049 reads, 310 reads per million, 1 experiments
aaaucucacgcuccaCCUGAAAUUCUGAUGCACCUCUCaggucgggggggagaccuccccaccgcgugacgaggcaccaugaugcucagga
...............(((((.(((.((.(((..((((((.(.(((.(((((....))))).)))).))).)))))).)).)))..))))).

Structure
aaaucucacgcucca     -A   C  A   AC   -   g u   g     g 
               CCUGA  AUU UG UGC  CUC UCa g cgg gggga a
               |||||  ||| || |||  ||| ||| | ||| |||||  
               ggacu  uag ac acg  gag agu c gcc ccccu c
--------------a     cg   u  c   --   c   g -   a     c 


Annotation confidence Not enough data
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Genome context
chr20: 34212987-34213077 [+]

Database links

Mature eca-miR-8909

Accession MIMAT0034437
Description Equus caballus eca-miR-8909 mature miRNA
Sequence 16 - CCUGAAAUUCUGAUGCACCUCUC - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545