miRBase entry: cfa-mir-8908a-2

Stem-loop cfa-mir-8908a-2


Accession
MI0028034
Description
Canis familiaris cfa-mir-8908a-2 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

cccuggacaacauccgucuucccgcguaacguguguagugcucugcugaggaaggugcugguugcauucauucauaagagUAAUUAGGACCUCCCUGAGCGGAGUaaugcucaccugaaggacgucugcagugucauccggagcg
..(((((..((((.((((((.(.(......(((.(((.(((((((((.(((.((((.((((((((..((........)))))))))).)))).))).))))))))).))).)))).).))))))......))))..)))))....

Structure
--cc     ca    -----c      c c cguaac   u   g         g   a    g        au  auu 
    cugga  acau      cgucuu c g      gug gua ugcucugcu agg aggu cugguugc  uc   c
    |||||  ||||      |||||| | |      ||| ||| ||||||||| ||| |||| ||||||||  ||    
    ggccu  ugug      gcagga g c      cac cgu aUGAGGCGA UCC UCCA GAUUAAUg  ag   a
gcga     ac    acgucu      a u ------   u   a         G   C    G        --  aau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 114686988-114687132 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from cfa-mir-8908a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8908a-3p

Accession MIMAT0034429
Description Canis familiaris cfa-miR-8908a-3p mature miRNA
Sequence 81 - UAAUUAGGACCUCCCUGAGCGGAGU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545