miRBase entry: cfa-mir-889

Stem-loop cfa-mir-889


Accession
MI0027984
Description
Canis familiaris cfa-mir-889 precursor miRNA
Gene family
MIPF0000514; mir-889


Sequence

caagcucuucuggauggugcaguucuuuggugcuuaaagaaugguuguccguaguauggucucuauauucauggugaUUAAUAUCGGACAACCAUUGUUuuaguauccaacuuugcuucaaaaguucucccaagcacgc
...(((.....((((..((.(((...((((((((.(((.((((((((((((..((.(((((.((((....)))).)))))))..)))))))))))).))).)))).))))....))).))...)))).....)))....

Structure
-caa   cuucu    -gg  c   -ucu    -    u   g            ua  a     u    a 
    gcu     ggau   ug agu    uugg ugcu aaa aaugguuguccg  gu ugguc cuau u
    |||     ||||   || |||    |||| |||| ||| ||||||||||||  || ||||| ||||  
    cga     cuug   ac ucg    aacc auga uUU UUACCAACAGGC  UA AUUag ggua u
cgca   acccu    aaa  u   uuuc    u    u   G            UA  -     u    c 


Annotation confidence Not enough data
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Genome context
chr8: 69276842-69276980 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from cfa-mir-889
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-889

Accession MIMAT0034387
Description Canis familiaris cfa-miR-889 mature miRNA
Sequence 78 - UUAAUAUCGGACAACCAUUGUU - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545