miRBase entry: cfa-mir-8880

Stem-loop cfa-mir-8880


Accession
MI0027977
Description
Canis familiaris cfa-mir-8880 precursor miRNA


Sequence

ucugggaugggguucaggggcugcguguuucucuaucggccauggacucugcccuguuucuggaaggacaugggGCAAGUCAGCCCUGUGGACAAACAuuucuccuuauccugucccagugccagcuccacgg
.((((((((((((..(((((....((((((.(((((.(((....((((.((((((((.(((....))).)))))))))))).)))..))))).))))))..))))).))))))))))))..............

Structure
-------------u            uc     cugc      c     -c   caug    c        u   g 
              cugggauggggu  agggg    guguuu ucuau  ggc    gacu ugcccugu ucu g
              ||||||||||||  |||||    |||||| |||||  |||    |||| |||||||| |||  
              gacccuguccua  uccuc    uACAAA AGGUG  CCG    CUGA ACGgggua agg a
ggcaccucgaccgu            -u     --uu      C     UC   ---A    -        c   a 


Annotation confidence Not enough data
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Genome context
chr6: 43075720-43075852 [+]

Database links

Mature cfa-miR-8880

Accession MIMAT0034380
Description Canis familiaris cfa-miR-8880 mature miRNA
Sequence 75 - GCAAGUCAGCCCUGUGGACAAACA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545