miRBase entry: cfa-mir-8859b

Stem-loop cfa-mir-8859b


Accession
MI0027954
Description
Canis familiaris cfa-mir-8859b precursor miRNA


Sequence

cucacggcccugcaccgcggauccgaauccgggggucggguuccgcgccuggaguccgccucgugguucugaguccgGGUCGGAUUCCGUGCCUGGAGUccgccccgcgggccugcaucgugguuccaaguccgggucc
.....(((((.((...((((((.....((((((.(.((((.((((.(((((((.((.(((....)))...)).))))))))))).))))).))))))))))))...))))))).....(.(((........))).)...

Structure
---------------------cucac     u  acc      ccgaa      g u    u    c       g  --c   u 
                          ggccc gc   gcggau     uccggg g cggg uccg gccugga uc   gcc c
                          ||||| ||   ||||||     |||||| | |||| |||| ||||||| ||   |||  
                          ccggg cg   cgccUG     AGGUCC U GCCU AGGC UGGgccu ag   ugg g
ccugggccugaaccuuggugcuacgu     -  ccc      -----      G -    U    -       g  ucu   u 


Annotation confidence Not enough data
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Genome context
chr18: 46690541-46690679 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-8859b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8859b

Accession MIMAT0034358
Description Canis familiaris cfa-miR-8859b mature miRNA
Sequence 78 - GGUCGGAUUCCGUGCCUGGAGU - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545