miRBase entry: cfa-mir-8849

Stem-loop cfa-mir-8849


Accession
MI0027940
Description
Canis familiaris cfa-mir-8849 precursor miRNA


Sequence

auugccgcguuggcuCCUUGGGAUUGGGACAUCGACGGGCccauugucccucggugccgcaucugaagcaggccccaggcgggguucggucgguu
...(((.((((((((.(((.((((..((.((((((.((((.....)))).))))))))..)))).)))..))))...)))).)))..........

Structure
-------auu   g    ---    -C   G    UG  A      C    c 
          gcc cguu   ggcu  CUU GGAU  GG CAUCGA GGGC c
          ||| ||||   ||||  ||| ||||  || |||||| |||| a
          ugg gcgg   ccgg  gaa ucua  cc guggcu ccug u
uuggcuggcu   g    acc    ac   g    cg  -      c    u 


Annotation confidence Not enough data
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Genome context
chr16: 13954683-13954777 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-8849
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8849

Accession MIMAT0034344
Description Canis familiaris cfa-miR-8849 mature miRNA
Sequence 16 - CCUUGGGAUUGGGACAUCGACGGGC - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545