Stem-loop cfa-mir-8848

Accession

MI0027937

Description

Canis familiaris cfa-mir-8848 precursor miRNA

Sequence

gaaccaccacagcaacugggucugugggcaggggugcacuuggcaguagcacuggugucugaggugcagguaugugcugaUCUUCUGUGAAACCAGGGUGCUAGUugggcuccuuucagugacucagguggagugguggggaggg
...(((((((..((.(((((((..((((.((((((.((.((((((.(....(((((.((.((((..(((.......)))..))))...)).)))))).)))))).)).))))))))))..))))))).))..)))))))......

Structure

---gaa       ag  a       ug    c      g  c      g agca     g  --u    ug   gu 
      ccaccac  ca cuggguc  uggg aggggu ca uuggca u    cuggu uc   gagg  cag  a
      |||||||  || |||||||  |||| |||||| || |||||| |    ||||| ||   ||||  |||  u
      gguggug  gu gacucag  acuu uccucg gu GAUCGU G    GACCA AG   CUUC  guc  g
gggagg       ag  g       ug    -      g  U      G ----     A  UGU    Ua   gu 

Annotation confidence Not enough data

Genome context

chr16: 35465007-35465151 [-]

Mature cfa-miR-8848

• Accession: MIMAT0034343
• Description: Canis familiaris cfa-miR-8848 mature miRNA
• Sequence: 81 - UCUUCUGUGAAACCAGGGUGCUAGU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545