Stem-loop cfa-mir-8840

Accession

MI0027926

Description

Canis familiaris cfa-mir-8840 precursor miRNA

Sequence

cugaggcuuggucccaguggggcacucugagggcauguaggauacauggcugacuugucaguggggcugaaaagcggacaUUUAGCCAGUGUCUUCAACUCUGCGuugaccuaaagagcaucccacaggaugccagucuuccaaa
..((((((.(((.((.((((((..((((..(((((((((((((((.(((((((..((((.((...........)).)))).)))))))))))).......))))).)).)))..))))..)))))).))..))))))))).....

Structure

---cu      u   -c  a      ca    ga   -  -     -------     a       cu    a  gggg 
     gaggcu ggu  cc gugggg  cucu  ggg ca uguag       gauac uggcuga  uguc gu    c
     |||||| |||  || ||||||  ||||  ||| || |||||       ||||| |||||||  |||| ||    u
     uucuga ccg  gg cacccu  gaga  ucc gu GCGUC       CUGUG ACCGAUU  acag cg    g
aaacc      -   ua  a      ac    aa   a  u     UCAACUU     -       -U    g  aaaa 

Annotation confidence Not enough data

Genome context

chr15: 32468976-32469120 [-]

Mature cfa-miR-8840

• Accession: MIMAT0034333
• Description: Canis familiaris cfa-miR-8840 mature miRNA
• Sequence: 81 - UUUAGCCAGUGUCUUCAACUCUGCG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545