Stem-loop cfa-mir-8800

Accession

MI0027880

Description

Canis familiaris cfa-mir-8800 precursor miRNA

Sequence

aagaauggaugcugaagggacucaguuggagugggcucucagguuugagacuggugcaguaggagugagcUAGCCUGGAUCUCUGAUUUGCAGAGcacacucacaaccugggcuacaauugaugc
.................((.(((((((((((((.(((((((((((.((((((((.(((((........))).)))))).)))).)))))).))))).))))).))).)))))))...........

Structure

aagaauggaugcugaag  a     -   -     g     -      u    -    u  -   agg 
                 gg cucag uug gagug gcucu cagguu gaga cugg gc agu   a
                 || ||||| ||| ||||| ||||| |||||| |||| |||| || |||    
                 uc ggguc aac cucac cGAGA GUUUAG CUCU GGUC CG Ucg   g
------cguaguuaaca  -     c   a     a     C      U    A    -  A   agu 

Annotation confidence Not enough data

Genome context

chr20: 37964390-37964514 [-]

Mature cfa-miR-8800

• Accession: MIMAT0034290
• Description: Canis familiaris cfa-miR-8800 mature miRNA
• Sequence: 71 - UAGCCUGGAUCUCUGAUUUGCAGAG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545