Stem-loop gra-MIR7504j

Accession

MI0027842

Description

Gossypium raimondii gra-MIR7504j precursor miRNA

Gene family

MIPF0001798; MIR7504

Sequence

agaaaugauaAUAUGAAACUGAGAUACCAUGucauuuguaucauuuucuaauaauuugauauuauuucagcauuuucaucuuaaauuucaacacaucauguugaauuugauuuuuuuuaaggaugaaaauguuaaaauaacauuaauuuauuguaaauaaauacaaauaacauaguaucacaguucauauaaucuuuuuuucc
.((((.(((.(((((((.(((.(((((.((((.((((((((...(((.((((((.(((((.((((((.(((((((((((((((((((.(((((.....)))))))))))...........))))))))))))).)))))).))))).)))))).)))...)))))))).)))).))))).)))))))))).))).))))....

Structure

---a    u   a       A   A     C    c        cau   c      u     a      c             -----------      u     c 
    gaaa gau AUAUGAA CUG GAUAC AUGu auuuguau   uuu uaauaa uugau uuauuu agcauuuucaucu           uaaauu caaca a
    |||| ||| ||||||| ||| ||||| |||| ||||||||   ||| |||||| ||||| |||||| |||||||||||||           |||||| ||||| u
    uuuu cua uauacuu gac cuaug uaca uaaacaua   aaa guuauu aauua aauaaa uuguaaaaguagg           guuuaa guugu c
ccuu    u   a       -   a     a    a        aau   u      u     c      a             aauuuuuuuua      -     a 

Annotation confidence Not enough data

Genome context

chr13: 4360927-4361129 [-]

Mature gra-miR7504j

• Accession: MIMAT0034247
• Description: Gossypium raimondii gra-miR7504j mature miRNA
• Sequence: 11 - AUAUGAAACUGAGAUACCAUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629