miRBase entry: gra-MIR7502c

Stem-loop gra-MIR7502c


Accession
MI0027609
Description
Gossypium raimondii gra-MIR7502c precursor miRNA
Gene family
MIPF0001869; MIR7502


Sequence

uuaguucuuuUUGUUAAAAGUUUCAUCCAUUuuuuuaguuaaaaaauaguaacuguauguugacauaaaguacacauaacguaauaggugucacuauuuagcuauucuauaaaccauaucgauuuuuaaggguaaaaauaaaugaaauuuucaacaaaaaagaucagu
...(.((((((((((.((((((((((..((((((....(((((((((((...(((.(((.((((((....(((.......)))....)))))).))).))).....))))............)))))))....))))))..)))))))))).))).))))))).)...

Structure
uua u       -   A          CC      uuag       ------------    --uaa   u   u      aaag   ac 
   g ucuuuUU GUU AAAGUUUCAU  AUUuuu    uuaaaaa            auag     cug aug ugacau    uac  a
   | ||||||| ||| ||||||||||  ||||||    |||||||            ||||     ||| ||| ||||||    |||  u
   c agaaaaa caa uuuuaaagua  uaaaaa    aauuuuu            uauc     gau uau acugug    aug  a
uga u       a   c          aa      uggg       agcuauaccaaa    uuauc   u   c      gaua   ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 59731063-59731230 [-]

Database links

Mature gra-miR7502c

Accession MIMAT0034014
Description Gossypium raimondii gra-miR7502c mature miRNA
Sequence 11 - UUGUUAAAAGUUUCAUCCAUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629