Accession
MI0027542
Description
Amborella trichopoda
atr-MIR398 precursor miRNA
Gene family
MIPF0000107;
MIR398
Sequence
20795
reads,
50583
reads per million, 4 experiments
agcccaaauucgaagaagcaucagaauggggaagucucaacaggagcgauaugagaacacacaaucauaugcauaaauauuguguaugugugugugcacgugugcaugugcaugugcgugcuugUGUGUUCCCAGGUCGCCCCUGccgagccugcccauaucuauaaauaauucuucuugcugcu
(((.(((....((((((.....((((((((.(.(.(((..((((.(((((.((.((((((((((.(((((((((((...))))))))))).((((((((((((......)))))))))))))))))))))).)).))))).))))..)))).).))))).)))........)))))))))..)))
(((.(((....((((((.....((((((((.(.(.(((..((((.(((((.((.((((((((((.(((((((((((...))))))))))).((((((((((((......)))))))))))))))))))))).)).))))).))))..)))).).))))).)))........)))))))))..)))
Structure
-c auuc ---gcauc - g a u aa a a a ucauaugcauaaauauuguguaugugu gc agc caa gaagaa aga auggg a g cuc cagg gcgau ug gaacacacaa gugugcacgugu a ||| ||| |||||| ||| ||||| | | ||| |||| ||||| || |||||||||| |||||||||||| ucg guu cuucuu ucu uaccc u c gag GUCC CGCUG AC CUUGUGUguu cgugcguguacg u uc ---- aauaaaua a g c - cc C G C --------------------------- ug
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00102: 1169815-1169999 [+]
Database links
Mature atr-miR398
| Accession | MIMAT0033945 |
| Description | Amborella trichopoda atr-miR398 mature miRNA |
| Sequence | 125 - UGUGUUCCCAGGUCGCCCCUG - 145 |
| Evidence |
experimental
Illumina [1] |
References
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