Accession
MI0027538
Description
Amborella trichopoda
atr-MIR396d precursor miRNA
Gene family
MIPF0000047;
MIR396
Sequence
2929
reads,
2532
reads per million, 4 experiments
auggugguuuaaggaaacaaggaggaagguuuagggcuuuuuauuggcaaauauggaagguuuaucucaacugauggcuucaugcuuCUCCACGGCUUUCUUGAACUUaguuugaauaaggugagccuucuuacaagaucaagaaagcugcggaaaaacauagauccacucaaaauuaugaacuuucaacagagagauagaucuccaagguaaguuaucuagccauugu
(((((((((........(((..((((((........)))))).))).......((((.((((((((((...((((((..(((((.((.(((.((((((((((((.(((.((..((...(((....)))))..))))).)))))))))))).))).)).))).)).))).)))......(((....))).....))))))))))))))(((((...))))))))))))))
(((((((((........(((..((((((........)))))).))).......((((.((((((((((...((((((..(((((.((.(((.((((((((((((.(((.((..((...(((....)))))..))))).)))))))))))).))).)).))).)).))).)))......(((....))).....))))))))))))))(((((...))))))))))))))
Structure
uaaggaaacaaggaggaagguuuagggcuuuuuauuggcaaaua a ------------------aac - cu - c C A A a uu aua u
auggugguu ugga gguuuaucuc uga ugg uc aug uu UCC CGGCUUUCUUGA CUU gu ga agg g
||||||||| |||| |||||||||| ||| ||| || ||| || ||| |||||||||||| ||| || || |||
uguuaccga accu cuagauagag acu acc ag uac aa agg gucgaaagaacu gaa ca cu ucc a
-------------------------------ucuauugaaugga - agacaacuuucaaguauuaaa c -u a a a c a - uu --- g
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
scaffold00090: 1850377-1850605 [-]
Database links
Mature atr-miR396d
| Accession | MIMAT0033941 |
| Description | Amborella trichopoda atr-miR396d mature miRNA |
| Sequence | 88 - CUCCACGGCUUUCUUGAACUU - 108 |
| Evidence |
experimental
Illumina [1] |
References
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