miRBase entry: atr-MIR396c

Stem-loop atr-MIR396c


Accession
MI0027537
Description
Amborella trichopoda atr-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396


Sequence

14447 reads, 6042 reads per million, 4 experiments
gagagaguggggcauguaaagagcaaugugguggaagagauggagagagaauuggaaguccugucaugcuuUUCCACAGCUUUCUUGAACUUcuuuaguccuugaauggcaucuagaaguucaaggaaguugugggaaaccauggcaauaaggauuuuuuaauugcaggagcaccccaccuuuc
(((((.((((((..(((.....(((((..........................(((((((((((((((.(((((((((((((((((((((((((.....((......)).....))))))))))))))))))))))))).))))))....)))))))))..)))))....))))))))))))))

Structure
     a      ca   aaaga     gugguggaagagauggagagagaauu         ----      c                         uuagu  uu 
gagag gugggg  ugu     gcaau                          ggaaguccu    gucaug uuUUCCACAGCUUUCUUGAACUUcu     cc  g
||||| ||||||  |||     |||||                          |||||||||    |||||| |||||||||||||||||||||||||     ||   
cuuuc cacccc  acg     cguua                          uuuuuagga    cgguac aaaggguguugaaggaacuugaaga     gg  a
     -      --   -agga     ------------------------au         auaa      c                         ucuac  ua 


Annotation confidence Not enough data
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Genome context
scaffold00046: 1545633-1545816 [+]

Database links

Mature atr-miR396c

Accession MIMAT0033940
Description Amborella trichopoda atr-miR396c mature miRNA
Sequence 72 - UUCCACAGCUUUCUUGAACUU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089