miRBase entry: atr-MIR169c

Stem-loop atr-MIR169c


Accession
MI0027521
Description
Amborella trichopoda atr-MIR169c precursor miRNA
Gene family
MIPF0000012; MIR169_1


Sequence

45 reads, 143 reads per million, 3 experiments
ucaaugaggaggcaaaggucucacaugaagggauggggcacuuuuugUAGCCAAGGAUGACUUGCCUaugcucucaagcauaagagagcuuacuuccuuuugguauucuucaguuucuaagugagucuuccuuggcuacuuauuaugcuucaccccucaugucaggcacaagucuuucauga
...(((((.((((....((((.((((((.(((.(((((((......(((((((((((.(((((((....((((((........)))))).((((.......))))...............))))))).)))))))))))......)))))))))).)))))).))))....)))))))))..

Structure
uca     g    aaag    c      a   a       cuuuuu           U       ---------------------------CUau      aag 
   augag aggc    gucu acauga ggg uggggca      gUAGCCAAGGA GACUUGC                               gcucuc   c
   ||||| ||||    |||| |||||| ||| |||||||      ||||||||||| |||||||                               ||||||    
   uacuu ucug    cgga uguacu ccc acuucgu      caucgguuccu cugagug                               cgagag   a
-ag     -    aaca    c      c   -       auuauu           u       aaucuuugacuucuuaugguuuuccuucauu      aau 


Annotation confidence Not enough data
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Genome context
scaffold00057: 2391549-2391730 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR169c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature atr-miR169c

Accession MIMAT0033923
Description Amborella trichopoda atr-miR169c mature miRNA
Sequence 48 - UAGCCAAGGAUGACUUGCCU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089