Accession
MI0027520
Description
Amborella trichopoda
atr-MIR169b precursor miRNA
Gene family
MIPF0000012;
MIR169_1
Sequence
73
reads,
44
reads per million, 2 experiments
ugagcuaagggcacagaaguagagccucacauggaggggugcaaugugcuaggguagccaaggaugacuugccuuugaucacaaugugugagagagugaaaugguucuccaccagugcuuuaugAGCAAGUCGCCUUGGCUAACCuaaggaucuugccucucauguuaggccuucucuucuuauuca
((((.((((((...(((((....((((.(((((..((((.((((.((.((.((((((((((((.(((((((((...((.(((..((.(((.(((((........))))))))))))).))...).)))))))))))))))).)))).)).)).))))))))))))).))))))))).))))))))))
((((.((((((...(((((....((((.(((((..((((.((((.((.((.((((((((((((.(((((((((...((.(((..((.(((.(((((........))))))))))))).))...).)))))))))))))))).)))).)).)).))))))))))))).))))))))).))))))))))
Structure
c cac uaga c ga u u g a - a - uuu u aa u a uga
ugag uaaggg agaag gccu acaug gggg gcaa gu cu gggu agccaagg ugacuugc c ga cac ug gug gagag a
|||| |||||| ||||| |||| ||||| |||| |||| || || |||| |||||||| |||||||| | || ||| || ||| |||||
acuu auucuu ucuuc cgga uguac ucuc cguu ua ga uCCA UCGGUUCC GCUGAACG g uu gug ac cac cucuu a
- --c ---- u -- - c g a A - A uau c -- - - ggu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
scaffold00057: 2389278-2389464 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR169b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature atr-miR169b
| Accession | MIMAT0033922 |
| Description | Amborella trichopoda atr-miR169b mature miRNA |
| Sequence | 125 - AGCAAGUCGCCUUGGCUAACC - 145 |
| Evidence |
experimental
Illumina [1] |
References
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