miRBase entry: sma-mir-2162

Stem-loop sma-mir-2162


Accession
MI0027274
Description
Schistosoma mansoni sma-mir-2162 precursor miRNA
Gene family
MIPF0001950; mir-2162

Literature search
2 open access papers mention sma-mir-2162
(4 sentences)

Sequence

aggaccaugcuaaagaugucguuuggauggaccucucuaggggaugAGUGGGAUGGUUGCAUAUAUACaaugcugacaaugUAUUAUGCAACGUUUCACUCUaccccagggacucuacuucaaccuacauagugcuuucaugaauua
.....((((..((((((((.(.(((((((((..(((((.((((..((((((((((.(((((((.(((((.((....)).))))))))))))))))))))))..))))))))).)))).))))).).))))....)))))))).....

Structure
aggac    cu    ----    c u     -    cc     a    au          G       U     a  c 
     caug  aaag    augu g uugga ugga  ucucu gggg  gAGUGGGAUG UUGCAUA AUACa ug u
     ||||  ||||    |||| | ||||| ||||  ||||| ||||  |||||||||| ||||||| ||||| ||  
     guac  uuuc    uaca c aacuu aucu  aggga cccc  CUCACUUUGC AACGUAU UAUgu ac g
auuaa    --    guga    u c     c    -c     -    aU          -       -     a  a 


Annotation confidence Not enough data
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Genome context
SC_0049: 36149-36295 [+]

Database links

Mature sma-miR-2162-5p

Accession MIMAT0033665
Description Schistosoma mansoni sma-miR-2162-5p mature miRNA
Sequence 47 - AGUGGGAUGGUUGCAUAUAUAC - 68
Evidence experimental
Illumina [1], SOLiD [1]

Mature sma-miR-2162-3p

Accession MIMAT0033666
Description Schistosoma mansoni sma-miR-2162-3p mature miRNA
Sequence 82 - UAUUAUGCAACGUUUCACUCU - 102
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402