miRBase entry: ssa-mir-7a-1

Stem-loop ssa-mir-7a-1


Accession
MI0026745
Description
Salmo salar ssa-mir-7a-1 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

UGGAAGACUAGUGAUUUUGUUGUuaugugucaaaauugaCAACAAGUCAUGGUCUACCUCA
.((.((((((.((((((.(((((((..(.....)..))))))))))))))))))).))...

Structure
--U  A      G      U       ug g 
   GG AGACUA UGAUUU GUUGUua  u u
   || |||||| |||||| |||||||  | c
   CC UCUGGU ACUGAA CAACagu  a a
ACU  A      -      -       ua a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-7a-5p

Accession MIMAT0032693
Description Salmo salar ssa-miR-7a-5p mature miRNA
Sequence 1 - UGGAAGACUAGUGAUUUUGUUGU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-7a-1-3p

Accession MIMAT0032694
Description Salmo salar ssa-miR-7a-1-3p mature miRNA
Sequence 40 - CAACAAGUCAUGGUCUACCUCA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482