miRBase entry: ssa-let-7a-2

Stem-loop ssa-let-7a-2


Accession
MI0026742
Description
Salmo salar ssa-let-7a-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7a-2
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUgagaauuacaccccgggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.((((((((((((((...................)))))))))))))).))).)))...

Structure
--U   G   U              agaauuac 
   GAG UAG AGGUUGUAUAGUUg        a
   ||| ||| ||||||||||||||        c
   UUC AUC UCCGACAUGUCaau        c
CCU   G   C              agagggcc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-let-7a-5p

Accession MIMAT0032688
Description Salmo salar ssa-let-7a-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7a-3p

Accession MIMAT0032689
Description Salmo salar ssa-let-7a-3p mature miRNA
Sequence 46 - CUGUACAGCCUCCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482