miRBase entry: ssa-let-7a-1

Stem-loop ssa-let-7a-1


Accession
MI0026740
Description
Salmo salar ssa-let-7a-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7a-1
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUcagagugacaucacaggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.((((((((((((((...(((....)))....))..)))))))))))).))).)))...

Structure
--U   G   U            --  -aga   a 
   GAG UAG AGGUUGUAUAGU  Uc    gug c
   ||| ||| ||||||||||||  ||    |||  
   UUC AUC UCCGACAUGUCa  ag    cac a
CCU   G   C            au  agga   u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7a-5p

Accession MIMAT0032688
Description Salmo salar ssa-let-7a-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7a-3p

Accession MIMAT0032689
Description Salmo salar ssa-let-7a-3p mature miRNA
Sequence 46 - CUGUACAGCCUCCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482