miRBase entry: ssa-mir-727-2

Stem-loop ssa-mir-727-2


Accession
MI0026733
Description
Salmo salar ssa-mir-727-2 precursor miRNA
Gene family
MIPF0001371; mir-727


Sequence

UCAGUCUUCAAUUCCUCCCAGCccguaacaauggaaacugugaGUUGAGGCGAGUUGAAGACU
..(((((((((((((((.(((.((((....))))...))).))).......))))))))))))

Structure
UC            -------   C   --C    a 
  AGUCUUCAAUUC       CUC CAG   ccgu a
  ||||||||||||       ||| |||   ||||  
  UCAGAAGUUGAG       Gag guc   ggua c
--            CGGAGUU   u   aaa    a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-727-5p

Accession MIMAT0032675
Description Salmo salar ssa-miR-727-5p mature miRNA
Sequence 1 - UCAGUCUUCAAUUCCUCCCAGC - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-727-3p

Accession MIMAT0032676
Description Salmo salar ssa-miR-727-3p mature miRNA
Sequence 44 - GUUGAGGCGAGUUGAAGACU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482