miRBase entry: ssa-mir-33a-1

Stem-loop ssa-mir-33a-1


Accession
MI0026690
Description
Salmo salar ssa-mir-33a-1 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

GUGCAUUGUAGUUGCAUUGCAcugggcugcaggaucaugCAAUGUGUCUGCAGUGCAGUA
.((((((((((..(((((((((((.....))).....))))))))..))))))))))...

Structure
--G          UU        -----   g 
   UGCAUUGUAG  GCAUUGCA     cug g
   ||||||||||  ||||||||     ||| c
   ACGUGACGUC  UGUAACgu     gac u
AUG          UG        acuag   g 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-33a-5p

Accession MIMAT0032618
Description Salmo salar ssa-miR-33a-5p mature miRNA
Sequence 1 - GUGCAUUGUAGUUGCAUUGCA - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-33a-3p

Accession MIMAT0032619
Description Salmo salar ssa-miR-33a-3p mature miRNA
Sequence 40 - CAAUGUGUCUGCAGUGCAGUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482