miRBase entry: ssa-mir-338a-1

Stem-loop ssa-mir-338a-1


Accession
MI0026688
Description
Salmo salar ssa-mir-338a-1 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

AACAAUAUCCUGAUGCUGCAUGAGUgugucaaguggaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((............))))))))))))).))).))))).

Structure
-     U   -         CAU    guguc 
 AACAA AUC CUGAUGCUG   GAGU     a
 ||||| ||| |||||||||   ||||      
 UUGUU UAG GACUACGAC   CUca     a
G     U   U         ---    aggug 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-338a-3p

Accession MIMAT0032615
Description Salmo salar ssa-miR-338a-3p mature miRNA
Sequence 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
Evidence experimental
Illumina [1]

Mature ssa-miR-338a-5p

Accession MIMAT0032616
Description Salmo salar ssa-miR-338a-5p mature miRNA
Sequence 1 - AACAAUAUCCUGAUGCUGCAUGAGU - 25
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482