Stem-loop ssa-mir-30c-2

Accession

MI0026680

Description

Salmo salar ssa-mir-30c-2 precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

4 open access papers mention ssa-mir-30c-2
(8 sentences)

Sequence

UGUAAACAUCCUUGACUGGAAGCUgguguucggucagcgagggCUUUCAGUCGGAUGUUUGCAGC
(((((((((((..(((((((((((....((((.....))))))))))))))))))))))))))..

Structure

--           UU           ggug    g 
  UGUAAACAUCC  GACUGGAAGCU    uucg u
  |||||||||||  |||||||||||    |||| c
  ACGUUUGUAGG  CUGACUUUCgg    gagc a
CG           --           ----    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-30c-5p

• Accession: MIMAT0032606
• Description: Salmo salar ssa-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30c-3p

• Accession: MIMAT0032607
• Description: Salmo salar ssa-miR-30c-3p mature miRNA
• Sequence: 44 - CUUUCAGUCGGAUGUUUGCAGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482