miRBase entry: ssa-mir-30c-1

Stem-loop ssa-mir-30c-1


Accession
MI0026679
Description
Salmo salar ssa-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
4 open access papers mention ssa-mir-30c-1
(8 sentences)

Sequence

UGUAAACAUCCUUGACUGGAAGCUgggguuuggacagcaagggCUUUCAGUCGGAUGUUUGCAGC
(((((((((((..(((((((((((...(((.....)))...))))))))))))))))))))))..

Structure
--           UU           ggg   u 
  UGUAAACAUCC  GACUGGAAGCU   guu g
  |||||||||||  |||||||||||   ||| g
  ACGUUUGUAGG  CUGACUUUCgg   cga a
CG           --           gaa   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-30c-5p

Accession MIMAT0032606
Description Salmo salar ssa-miR-30c-5p mature miRNA
Sequence 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-30c-3p

Accession MIMAT0032607
Description Salmo salar ssa-miR-30c-3p mature miRNA
Sequence 44 - CUUUCAGUCGGAUGUUUGCAGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482