miRBase entry: ssa-mir-30a-3

Stem-loop ssa-mir-30a-3


Accession
MI0026674
Description
Salmo salar ssa-mir-30a-3 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
3 open access papers mention ssa-mir-30a-3
(3 sentences)

Sequence

UGUAAACAUCCUACACUCUCAGCugugacaucaucgagCUGGGAGAGGGGUGUUUACACU
((((((((((((...(((((((((.(((.....)))))))))))).))))))))))))..

Structure
--            ACA         g   c 
  UGUAAACAUCCU   CUCUCAGCu uga a
  ||||||||||||   ||||||||| ||| u
  ACAUUUGUGGGG   GAGGGUCga gcu c
UC            --A         -   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-30a-5p

Accession MIMAT0032600
Description Salmo salar ssa-miR-30a-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCAGC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-30a-3-3p

Accession MIMAT0032601
Description Salmo salar ssa-miR-30a-3-3p mature miRNA
Sequence 39 - CUGGGAGAGGGGUGUUUACACU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482